PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g13409.1.p
Common NameBRADI_4g13409
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 354aa    MW: 40129.6 Da    PI: 7.3946
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g13409.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1461.7e-14117196190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ evGF vr sk + + + +   +++ vCs+ gk+ +++         + + r+gC a+++v +  d++w++ + +  HnH l+
  Bradi4g13409.1.p 117 NFYNLYSWEVGFGVRLSKCRLTVHWK-KCMQEIVCSCAGKPMRDN---------NRSARCGCLAMIRVLRLGDNRWYICEHRDTHNHLLS 196
                       6*****************99995555.77889*******998865.........459******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-11117196IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDAAADIERA SLDCQPLGFD MNEPPVLQDQ AGSDNMENRG VATDIGQRGV LDPIGDISTE  60
GWRKRIRLGN APDERRPNPS RPCALEVAVR NYADRKTGEV VYPAIGMQFD SLDEAYNFYN  120
LYSWEVGFGV RLSKCRLTVH WKKCMQEIVC SCAGKPMRDN NRSARCGCLA MIRVLRLGDN  180
RWYICEHRDT HNHLLSSTCG EKLHWQPHRH MDKYTKELVK HLRENNVSLG KVYSIIGSFF  240
GSMENVPFTK RPLKALCGKI SRDQFDQDAV KTMEAFSAMQ DADLTFKYSV QIDDDSRIKT  300
LMWTSGRCIE KYACFGDVLS FDTTYRTNLY DMPFGLFVGV NNHFQSIILG GVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-163PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0Q3ENC30.0A0A0Q3ENC3_BRADI; Uncharacterized protein
STRINGMLOC_43923.31e-146(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-26FAR1-related sequence 3